Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
ChIP-seq
25
ATAC-seq
9
total RNA-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
Assay category
78
DNA binding
25
DNA accessibility
9
Transcription
4
3D chromatin structure
Target of assay
34
histone
34
histone modification
32
control
19
broad histone mark
15
narrow histone mark
12
transcription factor
5
RNA binding protein
Date released
48
May, 2021
19
August, 2017
16
February, 2023
12
August, 2021
8
February, 2018
6
March, 2020
5
December, 2017
4
February, 2021
4
January, 2018
4
October, 2019
December, 2019
1
August, 2018
Available data
26
bam
23
fastq
22
tagAlign
16
bigWig
7
bed bedgraph
7
bedpe bed3+
6
bed bed3+
5
bed bed3
4
bed narrowPeak
4
hic
3
txt
2
bigBed narrowPeak
2
ibed
2
tsv
Organism
127
Homo sapiens
Biosample type
915
tissue
552
primary cell
198
cell line
127
in vitro differentiated cells
7
stem cell
Organ
43
connective tissue
8
embryo
4
epithelium
1
adipose tissue
1
liver
1
pancreas
Project
127
AMP
Genome assembly (visualization)
297
hg19
GRCh38
4
hg18
Lab
73
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
14
inconsistent ontology term
Audit category:
1
missing controlled_by
assembly!
GRCh38
month_released!
December, 2019
BIOSAMPLE
ASSAY
127 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
in vitro differentiated cells
embryonic stem cell
38
6
5
1
adipocyte
19
8
1
1
neural progenitor cell
8
pancreatic endoderm
5
1
chondrocyte
5
+ See 17 more…
See all biosamples
Download