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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
9
total RNA-seq
7
pCHi-C
5
GRO-seq
2
single cell RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
Assay category
79
DNA binding
13
Transcription
Target of assay
35
histone
35
histone modification
32
control
20
broad histone mark
15
narrow histone mark
12
transcription factor
5
RNA binding protein
Date released
43
May, 2021
19
August, 2017
9
August, 2021
8
February, 2018
6
March, 2020
5
December, 2017
5
January, 2018
4
February, 2023
2
December, 2019
2
March, 2023
1
August, 2018
Available data
27
bam
24
fastq
23
tagAlign
8
tsv
6
bigWig
1
bed narrowPeak
1
bedpe bed3+
Organism
102
Homo sapiens
Biosample type
982
tissue
460
primary cell
132
cell line
97
in vitro differentiated cells
7
stem cell
Organ
25
connective tissue
8
embryo
4
epithelium
1
adipose tissue
1
liver
1
pancreas
Project
102
AMP
2
community
Genome assembly (visualization)
hg19
268
GRCh38
5
hg18
Lab
60
AMP-T2D consortium
42
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
8
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
assembly!
hg19
BIOSAMPLE
ASSAY
104 results
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ChIP-seq
total RNA-seq
pCHi-C
GRO-seq
single cell RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
in vitro differentiated cells
embryonic stem cell
38
5
1
adipocyte
19
1
neural progenitor cell
9
pancreatic endoderm
5
1
cardiomyocytes (cardiac muscle cell)
1
2
+ See 11 more…
stem cell
SB Ad3.1
1
1
hESC
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
+ See 1 more…
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