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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
9
total RNA-seq
4
GRO-seq
3
pCHi-C
2
single cell RNA-seq
Assay category
64
DNA binding
11
Transcription
Target of assay
35
histone
35
histone modification
32
control
20
broad histone mark
narrow histone mark
12
transcription factor
5
RNA binding protein
Date released
33
May, 2021
15
August, 2017
9
August, 2021
8
February, 2018
4
December, 2017
4
February, 2023
4
January, 2018
2
December, 2019
2
March, 2020
1
August, 2018
Available data
26
bam
22
fastq
19
tagAlign
5
bigWig
4
tsv
1
bed narrowPeak
1
bedpe bed3+
Organism
82
Homo sapiens
Biosample type
912
tissue
457
primary cell
132
cell line
82
in vitro differentiated cells
7
stem cell
Organ
20
connective tissue
7
embryo
4
epithelium
1
adipose tissue
1
liver
1
pancreas
Project
82
AMP
Genome assembly (visualization)
hg19
225
GRCh38
4
hg18
Lab
50
AMP-T2D consortium
32
Kyle Gaulton, UCSD
Audit category:
7
inconsistent ontology term
2
audit script error
assembly!
hg19
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
82 results
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ChIP-seq
total RNA-seq
GRO-seq
pCHi-C
single cell RNA-seq
in vitro differentiated cells
embryonic stem cell
28
5
1
adipocyte
15
1
neural progenitor cell
9
pancreatic endoderm
4
1
cardiomyocytes (cardiac muscle cell)
1
2
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