Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
115
ChIP-seq
48
total RNA-seq
17
ATAC-seq
1
DNase-seq
Assay category
115
DNA binding
48
Transcription
18
DNA accessibility
Target of assay
77
histone
77
histone modification
39
narrow histone mark
37
broad histone mark
33
transcription factor
6
RNA binding protein
5
control
3
chromatin remodeller
Date released
May, 2021
49
August, 2017
38
December, 2017
31
February, 2018
30
August, 2021
22
February, 2021
5
November, 2019
4
October, 2019
2
March, 2020
Available data
181
bam
159
bigWig
123
bed narrowPeak
118
fastq
48
tsv
19
bed bed3+
15
bigBed narrowPeak
13
tagAlign
1
bed broadPeak
1
bigBed broadPeak
Organism
181
Homo sapiens
Biosample type
1781
tissue
459
cell line
387
primary cell
181
in vitro differentiated cells
3
stem cell
Organ
53
connective tissue
19
embryo
16
epithelium
14
liver
Project
181
AMP
Genome assembly (visualization)
208
hg19
181
GRCh38
4
hg18
Lab
181
AMP-T2D consortium
Audit category:
31
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
17
inconsistent control read length
month_released!
May, 2021
BIOSAMPLE
ASSAY
181 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
adipocyte
48
4
1
neural progenitor cell
13
7
10
cardiac precursors (cardiac muscle cell)
19
1
pancreatic endoderm
13
4
hepatocyte
14
+ See 11 more…
See all biosamples
Download