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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
81
ChIP-seq
42
ATAC-seq
4
Hi-C
2
Capture-C
2
pCHi-C
1
DNase-seq
Assay category
127
Transcription
81
DNA binding
43
DNA accessibility
4
3D chromatin structure
Target of assay
54
histone
54
histone modification
28
narrow histone mark
26
transcription factor
25
broad histone mark
4
RNA binding protein
2
chromatin remodeller
1
control
Date released
89
May, 2021
49
August, 2017
December, 2017
33
August, 2021
31
February, 2018
26
February, 2021
12
February, 2023
8
October, 2019
6
March, 2020
5
November, 2019
Available data
226
bam
220
bigWig
127
tsv
97
bed narrowPeak
80
fastq
17
tagAlign
13
bed bed3+
7
bed bedgraph
6
bedpe bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
259
Homo sapiens
Biosample type
1719
tissue
628
primary cell
530
cell line
259
in vitro differentiated cells
Organ
73
connective tissue
12
embryo
4
epithelium
2
pancreas
1
heart
Project
259
AMP
Genome assembly (visualization)
259
hg19
227
GRCh38
4
hg18
Lab
247
AMP-T2D consortium
7
Struan F.A. Grant, CHOP
5
Kyle Gaulton, UCSD
Audit category:
106
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
8
inconsistent control read length
month_released!
December, 2017
BIOSAMPLE
ASSAY
259 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
Capture-C
pCHi-C
DNase-seq
in vitro differentiated cells
adipocyte
4
48
8
1
1
cardiomyocytes
59
3
neural progenitor cell
7
12
10
cardiac precursors (cardiac muscle cell)
19
1
1
embryonic stem cell
2
2
6
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