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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
191
ChIP-seq
47
total RNA-seq
32
ATAC-seq
4
GRO-seq
2
Capture-C
1
DNase-seq
1
pCHi-C
Assay category
191
DNA binding
47
Transcription
33
DNA accessibility
Target of assay
110
histone
110
histone modification
56
broad histone mark
53
narrow histone mark
46
transcription factor
35
control
11
RNA binding protein
3
chromatin remodeller
Date released
68
August, 2017
64
May, 2021
42
August, 2021
39
December, 2017
39
February, 2018
11
February, 2023
8
February, 2021
4
January, 2018
2
October, 2019
August, 2018
1
March, 2020
Available data
190
bam
166
bigWig
136
fastq
119
bed narrowPeak
41
tsv
37
tagAlign
23
bed bed3+
17
bigBed narrowPeak
6
bed bedgraph
5
bed bed3
2
txt
1
bed broadPeak
1
bigBed broadPeak
Organism
278
Homo sapiens
Biosample type
2646
tissue
1031
primary cell
570
cell line
278
in vitro differentiated cells
9
stem cell
Organ
92
connective tissue
23
embryo
19
epithelium
15
liver
3
pancreas
1
heart
Project
278
AMP
Genome assembly (visualization)
189
hg19
166
GRCh38
4
hg18
Lab
225
AMP-T2D consortium
47
Kyle Gaulton, UCSD
6
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
16
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
month_released!
August, 2018
BIOSAMPLE
ASSAY
278 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
Capture-C
DNase-seq
pCHi-C
in vitro differentiated cells
adipocyte
67
5
8
1
1
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
hepatocyte
15
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