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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
191
ChIP-seq
43
total RNA-seq
28
ATAC-seq
4
GRO-seq
2
Capture-C
2
pCHi-C
1
DNase-seq
Assay category
191
DNA binding
43
Transcription
29
DNA accessibility
Target of assay
110
histone
110
histone modification
56
broad histone mark
53
narrow histone mark
46
transcription factor
35
control
11
RNA binding protein
3
chromatin remodeller
Date released
68
August, 2017
64
May, 2021
42
August, 2021
39
December, 2017
39
February, 2018
11
February, 2023
February, 2021
4
January, 2018
2
October, 2019
1
August, 2018
1
March, 2020
Available data
186
bam
162
bigWig
137
fastq
119
bed narrowPeak
37
tagAlign
37
tsv
23
bed bed3+
17
bigBed narrowPeak
5
bed bed3
2
bed bedgraph
2
txt
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
Organism
271
Homo sapiens
Biosample type
2185
tissue
986
primary cell
500
cell line
271
in vitro differentiated cells
9
stem cell
Organ
85
connective tissue
23
embryo
19
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
271
AMP
Genome assembly (visualization)
181
hg19
162
GRCh38
4
hg18
Lab
218
AMP-T2D consortium
47
Kyle Gaulton, UCSD
6
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
16
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
month_released!
February, 2021
BIOSAMPLE
ASSAY
271 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
Capture-C
pCHi-C
DNase-seq
in vitro differentiated cells
adipocyte
67
1
4
1
1
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
hepatocyte
15
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