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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
156
ChIP-seq
47
total RNA-seq
32
ATAC-seq
4
GRO-seq
2
Capture-C
1
DNase-seq
1
pCHi-C
Assay category
156
DNA binding
47
Transcription
33
DNA accessibility
Target of assay
110
histone
110
histone modification
56
broad histone mark
53
narrow histone mark
46
transcription factor
control
11
RNA binding protein
3
chromatin remodeller
Date released
60
August, 2017
58
May, 2021
35
August, 2021
33
December, 2017
31
February, 2018
11
February, 2023
8
February, 2021
4
January, 2018
2
October, 2019
August, 2018
1
March, 2020
Available data
166
bigWig
162
bam
119
bed narrowPeak
116
fastq
41
tsv
27
tagAlign
18
bed bed3+
17
bigBed narrowPeak
6
bed bedgraph
5
bed bed3
2
txt
1
bed broadPeak
1
bigBed broadPeak
Organism
243
Homo sapiens
Biosample type
2499
tissue
1001
primary cell
495
cell line
243
in vitro differentiated cells
8
stem cell
Organ
84
connective tissue
18
embryo
17
epithelium
14
liver
2
pancreas
1
heart
Project
243
AMP
Genome assembly (visualization)
184
hg19
161
GRCh38
4
hg18
Lab
195
AMP-T2D consortium
42
Kyle Gaulton, UCSD
6
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
16
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
month_released!
August, 2018
target.investigated_as!
control
BIOSAMPLE
ASSAY
243 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
Capture-C
DNase-seq
pCHi-C
in vitro differentiated cells
adipocyte
59
5
8
1
1
embryonic stem cell
34
7
6
1
neural progenitor cell
14
7
10
pancreatic endoderm
13
4
1
hepatocyte
14
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