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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
110
ChIP-seq
Assay category
110
DNA binding
Target of assay
110
histone
110
histone modification
56
broad histone mark
53
narrow histone mark
46
transcription factor
35
control
11
RNA binding protein
3
chromatin remodeller
Date released
37
August, 2017
22
December, 2017
21
May, 2021
16
February, 2018
14
August, 2021
Available data
77
bam
76
bed narrowPeak
76
bigWig
63
fastq
26
tagAlign
12
bigBed narrowPeak
8
bed bed3+
Organism
110
Homo sapiens
Biosample type
591
tissue
220
primary cell
110
in vitro differentiated cells
26
cell line
2
stem cell
Organ
37
connective tissue
13
epithelium
12
liver
10
embryo
1
pancreas
Project
110
AMP
Genome assembly (visualization)
76
GRCh38
75
hg19
Lab
90
AMP-T2D consortium
20
Kyle Gaulton, UCSD
Audit category:
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
6
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
110 results
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ChIP-seq
in vitro differentiated cells
adipocyte
37
embryonic stem cell
22
neural progenitor cell
14
hepatocyte
12
pancreatic endoderm
10
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