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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
192
ChIP-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
1
DNase-seq
Assay category
192
DNA binding
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
111
histone
111
histone modification
56
broad histone mark
54
narrow histone mark
44
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
63
August, 2017
48
May, 2021
42
December, 2017
35
August, 2021
24
February, 2018
12
February, 2023
6
March, 2020
6
October, 2019
5
November, 2019
4
February, 2021
4
January, 2018
1
August, 2018
Available data
158
bam
132
bed narrowPeak
127
bigWig
120
fastq
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
2
tsv
1
bed broadPeak
1
bigBed broadPeak
Organism
250
Homo sapiens
Biosample type
1484
tissue
608
primary cell
534
cell line
250
in vitro differentiated cells
8
stem cell
Organ
83
connective tissue
22
embryo
22
epithelium
15
liver
3
pancreas
1
adipose tissue
Project
250
AMP
Genome assembly (visualization)
165
hg19
133
GRCh38
4
hg18
Lab
201
AMP-T2D consortium
42
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
24
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
17
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
assay_slims!
Transcription
BIOSAMPLE
ASSAY
250 results
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ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
DNase-seq
in vitro differentiated cells
adipocyte
62
8
1
1
embryonic stem cell
40
6
1
neural progenitor cell
21
10
pancreatic endoderm
17
1
hepatocyte
15
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