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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
ChIP-seq
15
total RNA-seq
4
GRO-seq
1
DNase-seq
1
pCHi-C
Assay category
114
DNA binding
15
Transcription
1
DNA accessibility
Target of assay
64
histone
64
histone modification
32
narrow histone mark
31
broad histone mark
28
transcription factor
22
control
6
RNA binding protein
3
chromatin remodeller
Date released
49
August, 2017
42
December, 2017
39
February, 2018
4
January, 2018
1
August, 2018
Available data
285
bam
254
bigWig
135
fastq
132
bed narrowPeak
131
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
135
Homo sapiens
Biosample type
414
cell line
365
primary cell
351
tissue
135
in vitro differentiated cells
4
stem cell
Organ
50
connective tissue
26
embryo
19
epithelium
15
liver
1
adipose tissue
Project
135
AMP
Genome assembly (visualization)
113
GRCh38
113
hg19
4
hg18
Lab
135
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
17
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
135 results
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ChIP-seq
total RNA-seq
GRO-seq
DNase-seq
pCHi-C
in vitro differentiated cells
adipocyte
48
1
pancreatic endoderm
17
4
1
hepatocyte
15
definitive endodermal cell
8
2
1
primitive gut cell
8
2
1
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