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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
181
ChIP-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
1
DNase-seq
Assay category
181
DNA binding
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
105
histone
105
histone modification
53
narrow histone mark
51
broad histone mark
39
transcription factor
37
control
11
RNA binding protein
1
chromatin remodeller
Date released
62
August, 2017
48
May, 2021
35
August, 2021
34
December, 2017
22
February, 2018
12
February, 2023
6
March, 2020
6
October, 2019
5
November, 2019
4
February, 2021
4
January, 2018
1
August, 2018
Available data
147
bam
115
bed narrowPeak
115
bigWig
109
fastq
40
tagAlign
17
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
2
tsv
1
bed broadPeak
1
bigBed broadPeak
Organism
239
Homo sapiens
Biosample type
1504
tissue
647
primary cell
521
cell line
239
in vitro differentiated cells
6
stem cell
Organ
82
connective tissue
21
epithelium
20
embryo
15
liver
3
pancreas
1
adipose tissue
Project
239
AMP
Genome assembly (visualization)
153
hg19
121
GRCh38
4
hg18
Lab
190
AMP-T2D consortium
42
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
23
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
assay_slims!
Transcription
BIOSAMPLE
ASSAY
239 results
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ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
DNase-seq
in vitro differentiated cells
adipocyte
61
8
1
1
embryonic stem cell
40
6
1
neural progenitor cell
21
10
pancreatic endoderm
16
1
hepatocyte
15
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