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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
144
ChIP-seq
131
total RNA-seq
32
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
144
DNA binding
133
Transcription
33
DNA accessibility
4
3D chromatin structure
Target of assay
85
histone
85
histone modification
43
narrow histone mark
41
broad histone mark
32
control
27
transcription factor
6
RNA binding protein
1
chromatin remodeller
Date released
85
May, 2021
62
August, 2017
38
August, 2021
37
February, 2018
34
December, 2017
26
February, 2021
13
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
274
bam
232
bigWig
131
tsv
124
fastq
111
bed narrowPeak
40
tagAlign
17
bigBed narrowPeak
15
bed bed3+
7
bedpe bed3+
5
bed bed3
4
bed bedgraph
4
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
323
Homo sapiens
Biosample type
2419
tissue
589
cell line
519
primary cell
323
in vitro differentiated cells
6
stem cell
Organ
87
connective tissue
26
embryo
23
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
323
AMP
Genome assembly (visualization)
268
hg19
248
GRCh38
4
hg18
Lab
323
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
113
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
323 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
61
5
7
1
cardiomyocytes
3
59
neural progenitor cell
21
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
pancreatic endoderm
16
4
1
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