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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
138
ChIP-seq
52
total RNA-seq
37
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
138
DNA binding
54
Transcription
38
DNA accessibility
4
3D chromatin structure
Target of assay
84
histone
84
histone modification
42
narrow histone mark
41
broad histone mark
31
control
23
transcription factor
6
RNA binding protein
1
chromatin remodeller
Date released
May, 2021
62
August, 2017
42
August, 2021
37
February, 2018
34
December, 2017
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
189
bam
153
bigWig
124
fastq
110
bed narrowPeak
52
tsv
34
tagAlign
17
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
245
Homo sapiens
Biosample type
2691
tissue
877
primary cell
615
cell line
245
in vitro differentiated cells
8
stem cell
Organ
90
connective tissue
24
embryo
18
epithelium
15
liver
1
adipose tissue
Project
245
AMP
Genome assembly (visualization)
191
hg19
164
GRCh38
4
hg18
Lab
238
AMP-T2D consortium
7
Struan F.A. Grant, CHOP
Audit category:
46
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
month_released!
May, 2021
BIOSAMPLE
ASSAY
245 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
61
5
8
1
1
neural progenitor cell
21
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
pancreatic endoderm
16
4
1
hepatocyte
15
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