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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
144
ChIP-seq
136
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
144
DNA binding
138
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
105
histone
105
histone modification
53
narrow histone mark
51
broad histone mark
39
transcription factor
control
11
RNA binding protein
1
chromatin remodeller
Date released
126
May, 2021
54
August, 2017
35
August, 2021
29
February, 2018
26
December, 2017
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
244
bam
242
bigWig
131
tsv
115
bed narrowPeak
102
fastq
30
tagAlign
17
bigBed narrowPeak
12
bed bed3+
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
340
Homo sapiens
Biosample type
2544
tissue
1048
primary cell
553
cell line
340
in vitro differentiated cells
7
stem cell
Organ
83
connective tissue
19
embryo
19
epithelium
14
liver
2
pancreas
1
adipose tissue
1
heart
Project
340
AMP
Genome assembly (visualization)
275
hg19
243
GRCh38
4
hg18
Lab
291
AMP-T2D consortium
42
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
112
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
target.investigated_as!
control
BIOSAMPLE
ASSAY
340 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
53
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
34
7
6
1
neural progenitor cell
14
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
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