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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
42
total RNA-seq
23
ATAC-seq
4
GRO-seq
2
pCHi-C
1
DNase-seq
Assay category
154
DNA binding
42
Transcription
24
DNA accessibility
Target of assay
90
histone
90
histone modification
46
broad histone mark
43
narrow histone mark
34
transcription factor
30
control
6
RNA binding protein
3
chromatin remodeller
Date released
68
August, 2017
39
December, 2017
39
February, 2018
38
August, 2021
17
May, 2021
9
February, 2023
8
February, 2021
4
January, 2018
2
October, 2019
1
August, 2018
1
March, 2020
Available data
190
bam
157
bigWig
137
fastq
116
bed narrowPeak
41
tsv
37
tagAlign
21
bed bed3+
17
bigBed narrowPeak
5
bed bed3
4
bed bedgraph
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
Organism
226
Homo sapiens
Biosample type
tissue
530
cell line
475
primary cell
226
in vitro differentiated cells
7
stem cell
Organ
89
connective tissue
23
embryo
19
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
226
AMP
Genome assembly (visualization)
178
hg19
166
GRCh38
4
hg18
Lab
226
AMP-T2D consortium
47
Kyle Gaulton, UCSD
6
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
16
inconsistent control read length
biosample_type!
tissue
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
226 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
pCHi-C
DNase-seq
in vitro differentiated cells
adipocyte
67
5
7
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
hepatocyte
15
definitive endodermal cell
8
2
1
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