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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
5
total RNA-seq
2
DNase-seq
1
ATAC-seq
1
Hi-C
1
RRBS
Assay category
19
DNA binding
5
Transcription
3
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
15
histone
15
histone modification
8
broad histone mark
7
narrow histone mark
2
RNA binding protein
2
control
2
transcription factor
1
chromatin remodeller
Date released
15
December, 2017
5
December, 2019
4
August, 2021
2
July, 2019
2
June, 2019
1
October, 2019
Available data
27
bam
25
bigWig
20
bed narrowPeak
16
bigBed narrowPeak
15
fastq
6
bed bed3+
5
tsv
4
tagAlign
2
bed broadPeak
2
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
29
Homo sapiens
Biosample type
401
cell line
361
tissue
15
in vitro differentiated cells
14
primary cell
Organ
430
epithelium
349
pancreas
136
connective tissue
37
vasculature
36
kidney
31
blood vessel
29
embryo
29
liver
22
vein
21
brain
14
heart
14
musculature of body
8
blood
8
bodily fluid
5
eye
3
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
29
AMP
Genome assembly (visualization)
27
hg19
25
GRCh38
Lab
29
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
29 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
Hi-C
RRBS
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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