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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
201
ChIP-seq
Assay category
201
DNA binding
140
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
114
histone
114
histone modification
57
broad histone mark
56
narrow histone mark
49
transcription factor
38
control
11
RNA binding protein
3
chromatin remodeller
Date released
67
August, 2017
46
December, 2017
43
May, 2021
24
February, 2018
21
August, 2021
Available data
149
bam
123
fastq
117
bigWig
112
bed narrowPeak
40
tagAlign
22
bed bed3+
14
bigBed narrowPeak
Organism
201
Homo sapiens
Biosample type
867
tissue
484
cell line
279
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
67
connective tissue
22
embryo
22
epithelium
15
liver
3
pancreas
Project
201
AMP
Genome assembly (visualization)
123
GRCh38
122
hg19
Lab
164
AMP-T2D consortium
37
Kyle Gaulton, UCSD
Audit category:
7
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
19
inconsistent control read length
BIOSAMPLE
ASSAY
201 results
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ChIP-seq
in vitro differentiated cells
adipocyte
67
embryonic stem cell
40
neural progenitor cell
21
pancreatic endoderm
18
hepatocyte
15
+ See 8 more…
stem cell
hESC
3
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