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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
179
ChIP-seq
134
total RNA-seq
42
ATAC-seq
9
pCHi-C
5
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNase-seq
Assay category
179
DNA binding
138
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
99
histone
99
histone modification
50
broad histone mark
48
narrow histone mark
46
transcription factor
34
control
9
RNA binding protein
2
chromatin remodeller
Date released
127
May, 2021
68
August, 2017
42
August, 2021
39
February, 2018
27
December, 2017
26
February, 2021
16
February, 2023
12
March, 2020
8
October, 2019
5
January, 2018
5
November, 2019
2
December, 2019
2
March, 2023
1
August, 2018
Available data
270
bam
242
bigWig
133
tsv
126
fastq
116
bed narrowPeak
37
tagAlign
28
bed bed3+
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
378
Homo sapiens
Biosample type
2722
tissue
682
primary cell
583
cell line
370
in vitro differentiated cells
10
stem cell
Organ
98
connective tissue
29
embryo
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
378
AMP
2
community
Genome assembly (visualization)
280
hg19
248
GRCh38
5
hg18
Lab
324
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
2
Anna Gloyn, Oxford
Audit category:
111
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
18
inconsistent control read length
organ_slims!
epithelium
BIOSAMPLE
ASSAY
380 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
+ See 26 more…
stem cell
hESC
3
1
SB Ad3.1
1
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
+ See 1 more…
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