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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1173
total RNA-seq
674
ChIP-seq
297
ATAC-seq
176
single cell RNA-seq
87
RNA microarray
30
pCHi-C
28
snATAC-seq
27
WGBS
20
Hi-C
16
small RNA-seq
11
RRBS
4
GRO-seq
4
MeRIP-seq
3
snDrop-seq
2
Capture-C
1
DNase-seq
Assay category
1365
Transcription
674
DNA binding
326
DNA accessibility
38
DNA methylation
20
3D chromatin structure
Target of assay
381
histone modification
380
histone
251
narrow histone mark
224
control
128
broad histone mark
71
transcription factor
12
RNA binding protein
2
chromatin remodeller
2
nucleotide modification
Date released
571
February, 2021
329
August, 2017
271
August, 2021
201
October, 2019
193
May, 2020
172
May, 2021
120
July, 2018
111
February, 2023
75
July, 2019
66
May, 2022
48
March, 2020
47
September, 2023
45
November, 2019
41
December, 2017
39
February, 2018
29
October, 2018
25
February, 2020
25
November, 2017
22
May, 2019
19
April, 2020
17
October, 2017
16
April, 2019
15
May, 2023
9
November, 2018
8
January, 2021
6
April, 2018
6
January, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
December, 2018
4
November, 2020
1
August, 2018
1
August, 2022
1
January, 2019
Available data
2198
bam
1991
bigWig
1207
tsv
1076
bed narrowPeak
bigBed narrowPeak
518
fastq
278
tagAlign
230
bed bed3+
214
bed broadPeak
177
bigBed broadPeak
160
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
17
bedpe bed3+
15
hic
10
bed bed3
7
bed bedgraph
6
csv
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
2550
Homo sapiens
Biosample type
2176
tissue
979
primary cell
377
in vitro differentiated cells
307
cell line
10
stem cell
Organ
631
connective tissue
479
adipose tissue
446
pancreas
313
liver
212
kidney
186
heart
158
bone element
149
brain
71
blood vessel
71
vasculature
53
eye
48
artery
44
musculature of body
38
limb
29
embryo
25
epithelium
20
lung
17
nerve
16
skeleton
12
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2456
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1542
hg19
1514
GRCh38
4
hg18
Lab
2187
AMP-T2D consortium
142
Katalin Susztak, Upenn
99
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
205
inconsistent ontology term
11
audit script error
Audit category:
29
missing controlled_by
Audit category:
17
inconsistent control read length
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
2553 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
pCHi-C
snATAC-seq
WGBS
Hi-C
small RNA-seq
RRBS
GRO-seq
MeRIP-seq
snDrop-seq
Capture-C
DNase-seq
tissue
islet of Langerhans
298
71
68
4
7
3
1
4
adipose tissue
382
1
2
1
3
liver
167
107
20
1
1
3
1
1
1
kidney
49
9
75
64
6
1
1
bone element
84
+ See 159 more…
in vitro differentiated cells
adipocyte
5
67
6
1
cardiomyocytes
59
3
embryonic stem cell
7
40
6
1
neural progenitor cell
7
21
10
pancreatic endoderm
4
18
1
+ See 31 more…
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