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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1084
total RNA-seq
822
ChIP-seq
300
ATAC-seq
176
DNase-seq
176
single cell RNA-seq
87
RNA microarray
30
pCHi-C
28
snATAC-seq
20
Hi-C
18
WGBS
16
small RNA-seq
6
RRBS
4
GRO-seq
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
2
Capture-C
Assay category
1276
Transcription
822
DNA binding
507
DNA accessibility
24
DNA methylation
20
3D chromatin structure
Target of assay
544
histone
544
histone modification
298
narrow histone mark
246
broad histone mark
187
control
93
transcription factor
28
RNA binding protein
3
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
571
February, 2021
August, 2017
271
August, 2021
250
October, 2019
193
May, 2020
172
May, 2021
163
June, 2019
120
July, 2018
115
May, 2019
111
February, 2023
91
December, 2017
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
March, 2020
47
September, 2023
45
November, 2019
39
February, 2018
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
January, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
November, 2020
1
August, 2018
1
August, 2022
Available data
1974
bam
1765
bigWig
1118
tsv
967
bed narrowPeak
555
bigBed narrowPeak
289
fastq
205
tagAlign
197
bed bed3+
187
bed broadPeak
176
bigBed broadPeak
160
txt
64
xls
20
bed bedMethyl
20
bigBed bedMethyl
17
bedpe bed3+
15
hic
10
bed bed3
7
bed bedgraph
6
csv
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
2777
Homo sapiens
Biosample type
2453
tissue
1029
primary cell
662
cell line
326
in vitro differentiated cells
10
stem cell
Organ
519
connective tissue
432
adipose tissue
361
pancreas
322
liver
299
kidney
274
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
73
artery
56
eye
56
musculature of body
43
nerve
39
epithelium
29
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2682
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1877
GRCh38
1823
hg19
4
hg18
Lab
2413
AMP-T2D consortium
142
Katalin Susztak, Upenn
99
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
206
inconsistent ontology term
27
inconsistent control
11
audit script error
Audit category:
5
missing controlled_by
Audit category:
12
inconsistent control read length
month_released!
August, 2017
BIOSAMPLE
ASSAY
2779 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
pCHi-C
snATAC-seq
Hi-C
WGBS
small RNA-seq
RRBS
GRO-seq
MeRIP-seq
FAIRE-seq
snDrop-seq
Capture-C
tissue
adipose tissue
382
3
1
islet of Langerhans
209
29
68
4
7
3
1
4
liver
167
97
20
2
1
1
1
1
kidney
49
27
75
13
64
6
1
1
1
bone element
84
+ See 174 more…
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
7
40
6
1
neural progenitor cell
7
21
10
pancreatic endoderm
4
18
1
cardiac precursors (cardiac muscle cell)
19
1
1
+ See 31 more…
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