Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
Hi-C
3
ATAC-seq
3
pCHi-C
2
single cell RNA-seq
2
total RNA-seq
Assay category
4
3D chromatin structure
4
Transcription
3
DNA accessibility
Date released
5
February, 2023
5
March, 2020
2
December, 2019
2
October, 2019
Available data
bam
93
bigWig
90
tsv
13
bed narrowPeak
6
bedpe bed3+
4
fastq
4
hic
3
tagAlign
2
bed bed3+
2
ibed
1
bed bedgraph
1
txt
Organism
14
Homo sapiens
Biosample type
87
tissue
30
cell line
14
in vitro differentiated cells
9
primary cell
1
stem cell
Organ
4
connective tissue
Project
14
AMP
Genome assembly (visualization)
9
hg19
Lab
13
AMP-T2D consortium
1
Struan F.A. Grant, CHOP
Audit category:
14
inconsistent ontology term
2
audit script error
files.file_type!
bam
BIOSAMPLE
ASSAY
14 results
search-icon
table-tab-icon
Clear Filters
Hi-C
ATAC-seq
pCHi-C
single cell RNA-seq
total RNA-seq
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
2
2
immature adipocyte
2
2
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
neuron cell of Hypothalamus (neuron)
1
Download