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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
63
ChIP-seq
6
ATAC-seq
4
GRO-seq
4
Hi-C
4
pCHi-C
2
single cell RNA-seq
Assay category
129
Transcription
63
DNA binding
6
DNA accessibility
4
3D chromatin structure
Target of assay
29
control
22
histone
22
histone modification
12
transcription factor
11
broad histone mark
11
narrow histone mark
5
RNA binding protein
Date released
126
May, 2021
23
February, 2018
18
February, 2021
15
August, 2021
9
December, 2017
8
March, 2020
4
January, 2018
4
October, 2019
2
December, 2019
1
February, 2023
Available data
232
bam
202
bigWig
126
tsv
bed narrowPeak
86
fastq
26
tagAlign
14
bigBed narrowPeak
12
bed bed3+
6
bedpe bed3+
4
hic
3
bed bedgraph
3
txt
2
ibed
Organism
210
Homo sapiens
Biosample type
1259
tissue
771
primary cell
258
cell line
210
in vitro differentiated cells
7
stem cell
Organ
connective tissue
15
embryo
6
epithelium
1
adipose tissue
1
heart
1
liver
1
pancreas
Project
210
AMP
Genome assembly (visualization)
138
hg19
126
GRCh38
4
hg18
Lab
162
AMP-T2D consortium
47
Kyle Gaulton, UCSD
1
Struan F.A. Grant, CHOP
Audit category:
98
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
files.file_type!
bed narrowPeak
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
210 results
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total RNA-seq
ChIP-seq
ATAC-seq
GRO-seq
Hi-C
pCHi-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
embryonic stem cell
7
38
5
1
cardiac precursors (cardiac muscle cell)
19
1
neural progenitor cell
7
8
pancreatic endoderm
4
6
1
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