Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
73
ChIP-seq
21
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
138
Transcription
73
DNA binding
21
DNA accessibility
4
3D chromatin structure
Target of assay
37
control
34
histone
34
histone modification
19
broad histone mark
17
transcription factor
narrow histone mark
5
RNA binding protein
Date released
117
May, 2021
26
February, 2021
23
February, 2018
21
August, 2017
17
August, 2021
14
February, 2023
8
December, 2017
8
March, 2020
6
October, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
250
bam
219
bigWig
131
tsv
108
fastq
bed narrowPeak
28
tagAlign
21
bed bed3+
12
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
247
Homo sapiens
Biosample type
1735
tissue
782
primary cell
257
cell line
247
in vitro differentiated cells
8
stem cell
Organ
48
connective tissue
14
embryo
6
epithelium
1
adipose tissue
1
heart
1
liver
1
pancreas
Project
247
AMP
Genome assembly (visualization)
166
hg19
137
GRCh38
4
hg18
Lab
207
AMP-T2D consortium
37
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
102
inconsistent ontology term
2
audit script error
Audit category:
5
missing controlled_by
files.file_type!
bed narrowPeak
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
247 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
embryonic stem cell
7
28
5
1
adipocyte
5
21
7
1
cardiac precursors (cardiac muscle cell)
19
1
neural progenitor cell
7
8
+ See 29 more…
See all biosamples
Download