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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
ChIP-seq
132
total RNA-seq
30
ATAC-seq
4
GRO-seq
2
Capture-C
2
pCHi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
198
DNA binding
134
Transcription
31
DNA accessibility
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
132
May, 2021
68
August, 2017
43
December, 2017
42
August, 2021
39
February, 2018
26
February, 2021
February, 2023
6
October, 2019
5
November, 2019
4
January, 2018
4
March, 2020
2
December, 2019
Available data
291
bam
256
bigWig
141
fastq
131
tsv
130
bed narrowPeak
40
tagAlign
21
bed bed3+
17
bigBed narrowPeak
bedpe bed3+
4
bed bedgraph
4
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
371
Homo sapiens
Biosample type
2632
tissue
996
primary cell
654
cell line
371
in vitro differentiated cells
10
stem cell
Organ
83
connective tissue
29
embryo
24
epithelium
15
liver
3
pancreas
1
heart
Project
371
AMP
Genome assembly (visualization)
279
hg19
265
GRCh38
4
hg18
Lab
320
AMP-T2D consortium
47
Kyle Gaulton, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
104
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
files.file_type!
bedpe bed3+
month_released!
February, 2023
BIOSAMPLE
ASSAY
371 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
Capture-C
pCHi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
4
7
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
5
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
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