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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
ATAC-seq
9
total RNA-seq
5
pCHi-C
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
DNA binding
30
DNA accessibility
11
Transcription
4
3D chromatin structure
Date released
13
February, 2023
12
August, 2021
6
March, 2020
5
May, 2021
5
November, 2019
4
February, 2021
4
October, 2019
2
December, 2019
1
August, 2018
Available data
145
bam
bigWig
131
tsv
22
bed narrowPeak
21
fastq
7
bed bedgraph
7
bedpe bed3+
6
bed bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
52
Homo sapiens
Biosample type
713
tissue
443
primary cell
67
cell line
52
in vitro differentiated cells
6
stem cell
Organ
20
connective tissue
1
adipose tissue
Project
52
AMP
Genome assembly (visualization)
38
hg19
17
GRCh38
Lab
45
AMP-T2D consortium
5
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
20
inconsistent ontology term
2
audit script error
files.file_type!
bigWig
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
52 results
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ATAC-seq
total RNA-seq
pCHi-C
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
neural progenitor cell
10
adipocyte
5
1
1
cardiomyocytes (cardiac muscle cell)
1
2
2
2
embryonic stem cell
5
1
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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