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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ChIP-seq
30
ATAC-seq
9
total RNA-seq
5
pCHi-C
4
Hi-C
2
Capture-C
Assay category
83
DNA binding
30
DNA accessibility
9
Transcription
4
3D chromatin structure
Target of assay
37
control
34
histone
34
histone modification
19
broad histone mark
15
narrow histone mark
12
transcription factor
5
RNA binding protein
Date released
43
May, 2021
20
August, 2017
20
August, 2021
13
February, 2023
9
December, 2017
8
February, 2018
6
March, 2020
5
November, 2019
4
February, 2021
4
October, 2019
1
August, 2018
Available data
291
bam
bigWig
141
fastq
132
bed narrowPeak
129
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
133
Homo sapiens
Biosample type
996
tissue
444
primary cell
140
cell line
133
in vitro differentiated cells
7
stem cell
Organ
40
connective tissue
8
embryo
4
epithelium
1
adipose tissue
1
liver
1
pancreas
Project
133
AMP
Genome assembly (visualization)
43
hg19
22
GRCh38
Lab
89
AMP-T2D consortium
42
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
22
inconsistent ontology term
audit script error
Audit category:
1
missing controlled_by
files.file_type!
bigWig
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
133 results
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ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
Hi-C
Capture-C
in vitro differentiated cells
embryonic stem cell
38
5
1
adipocyte
20
5
1
1
neural progenitor cell
8
10
pancreatic endoderm
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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