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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
ChIP-seq
21
ATAC-seq
7
total RNA-seq
2
Capture-C
2
pCHi-C
Assay category
81
DNA binding
21
DNA accessibility
7
Transcription
Target of assay
35
control
34
histone
34
histone modification
19
broad histone mark
15
narrow histone mark
12
transcription factor
5
RNA binding protein
Date released
43
May, 2021
20
August, 2017
20
August, 2021
9
February, 2023
8
February, 2018
7
December, 2017
4
February, 2021
1
August, 2018
1
March, 2020
Available data
190
bam
bigWig
137
fastq
119
bed narrowPeak
41
tsv
37
tagAlign
23
bed bed3+
17
bigBed narrowPeak
6
bed bedgraph
5
bed bed3
2
txt
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
Organism
113
Homo sapiens
Biosample type
917
tissue
459
primary cell
113
in vitro differentiated cells
106
cell line
6
stem cell
Organ
36
connective tissue
6
embryo
2
epithelium
1
adipose tissue
1
liver
1
pancreas
Project
113
AMP
Genome assembly (visualization)
28
hg19
15
GRCh38
Lab
69
AMP-T2D consortium
42
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
files.file_type!
bigWig
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
113 results
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ChIP-seq
ATAC-seq
total RNA-seq
Capture-C
pCHi-C
in vitro differentiated cells
embryonic stem cell
38
5
1
adipocyte
20
5
1
1
neural progenitor cell
8
10
pancreatic endoderm
6
chondrocyte
5
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