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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
total RNA-seq
41
ChIP-seq
32
ATAC-seq
4
Hi-C
4
pCHi-C
2
single cell RNA-seq
Assay category
118
Transcription
41
DNA binding
32
DNA accessibility
4
3D chromatin structure
Target of assay
27
histone
27
histone modification
15
broad histone mark
12
narrow histone mark
10
control
4
transcription factor
Date released
85
May, 2021
38
August, 2021
26
February, 2021
14
August, 2017
13
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
2
December, 2019
Available data
291
bam
249
bigWig
fastq
131
tsv
128
bed narrowPeak
40
tagAlign
23
bed bed3+
17
bigBed narrowPeak
7
bedpe bed3+
5
bed bed3
4
bed bedgraph
4
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
199
Homo sapiens
Biosample type
2074
tissue
284
primary cell
199
in vitro differentiated cells
188
cell line
4
stem cell
Organ
38
connective tissue
5
epithelium
3
pancreas
2
embryo
1
heart
Project
199
AMP
Genome assembly (visualization)
167
hg19
147
GRCh38
Lab
199
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
110
inconsistent ontology term
2
audit script error
files.file_type!
fastq
BIOSAMPLE
ASSAY
199 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
pCHi-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
3
neural progenitor cell
7
21
10
adipocyte
5
14
7
cardiac precursors (cardiac muscle cell)
19
1
1
cardiomyocytes (cardiac muscle cell)
3
1
2
2
2
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