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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
146
ChIP-seq
127
total RNA-seq
17
ATAC-seq
DNase-seq
Assay category
146
DNA binding
127
Transcription
17
DNA accessibility
Target of assay
79
histone
79
histone modification
41
narrow histone mark
37
broad histone mark
37
transcription factor
30
control
6
RNA binding protein
3
chromatin remodeller
Date released
85
May, 2021
53
August, 2017
43
December, 2017
39
February, 2018
37
August, 2021
22
February, 2021
5
November, 2019
4
October, 2019
2
March, 2020
Available data
290
bam
258
bigWig
140
fastq
131
bed narrowPeak
131
tsv
40
tagAlign
25
bed bed3+
16
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
Organism
290
Homo sapiens
Biosample type
1730
tissue
580
cell line
580
primary cell
290
in vitro differentiated cells
3
stem cell
Organ
58
connective tissue
28
embryo
24
epithelium
15
liver
3
pancreas
1
heart
Project
290
AMP
Genome assembly (visualization)
264
GRCh38
263
hg19
Lab
290
AMP-T2D consortium
Audit category:
101
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
290 results
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ChIP-seq
total RNA-seq
ATAC-seq
in vitro differentiated cells
cardiomyocytes
3
59
adipocyte
53
4
neural progenitor cell
20
7
10
pancreatic endoderm
18
4
cardiac precursors (cardiac muscle cell)
19
1
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