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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
140
ChIP-seq
127
total RNA-seq
17
ATAC-seq
DNase-seq
Assay category
140
DNA binding
127
Transcription
17
DNA accessibility
Target of assay
78
histone
78
histone modification
40
narrow histone mark
37
broad histone mark
32
transcription factor
30
control
6
RNA binding protein
3
chromatin remodeller
Date released
85
May, 2021
48
August, 2017
42
December, 2017
39
February, 2018
37
August, 2021
22
February, 2021
5
November, 2019
4
October, 2019
2
March, 2020
Available data
284
bam
253
bigWig
134
fastq
131
bed narrowPeak
131
tsv
40
tagAlign
25
bed bed3+
16
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
Organism
284
Homo sapiens
Biosample type
1705
tissue
567
cell line
536
primary cell
284
in vitro differentiated cells
3
stem cell
Organ
53
connective tissue
27
embryo
24
epithelium
15
liver
3
pancreas
1
heart
Project
284
AMP
Genome assembly (visualization)
259
GRCh38
258
hg19
Lab
284
AMP-T2D consortium
Audit category:
101
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
17
inconsistent control read length
assay_title!
DNase-seq
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
284 results
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ChIP-seq
total RNA-seq
ATAC-seq
in vitro differentiated cells
cardiomyocytes
3
59
adipocyte
48
4
neural progenitor cell
20
7
10
pancreatic endoderm
17
4
cardiac precursors (cardiac muscle cell)
19
1
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