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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
132
ChIP-seq
105
total RNA-seq
17
ATAC-seq
Assay category
132
DNA binding
105
Transcription
17
DNA accessibility
Target of assay
67
histone
67
histone modification
36
narrow histone mark
35
transcription factor
30
broad histone mark
30
control
4
RNA binding protein
2
chromatin remodeller
Date released
85
May, 2021
53
August, 2017
39
February, 2018
37
August, 2021
29
December, 2017
February, 2021
5
November, 2019
4
October, 2019
2
March, 2020
Available data
268
bam
236
bigWig
140
fastq
131
bed narrowPeak
109
tsv
40
tagAlign
25
bed bed3+
bigBed narrowPeak
7
bedpe bed3+
5
bed bed3
4
hic
3
bed bedgraph
3
txt
2
ibed
Organism
254
Homo sapiens
Biosample type
895
tissue
497
primary cell
254
in vitro differentiated cells
132
cell line
3
stem cell
Organ
54
connective tissue
28
embryo
10
epithelium
3
pancreas
1
heart
1
liver
Project
254
AMP
Genome assembly (visualization)
228
GRCh38
227
hg19
Lab
254
AMP-T2D consortium
Audit category:
83
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
assay_title!
DNase-seq
files.file_type!
bigBed narrowPeak
month_released!
February, 2021
BIOSAMPLE
ASSAY
254 results
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ChIP-seq
total RNA-seq
ATAC-seq
in vitro differentiated cells
cardiomyocytes
3
59
adipocyte
53
neural progenitor cell
20
7
10
pancreatic endoderm
18
4
definitive endodermal cell
8
2
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