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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
140
ChIP-seq
127
total RNA-seq
17
ATAC-seq
1
DNase-seq
Assay category
140
DNA binding
127
Transcription
18
DNA accessibility
Target of assay
78
histone
78
histone modification
40
narrow histone mark
37
broad histone mark
32
transcription factor
30
control
6
RNA binding protein
3
chromatin remodeller
Date released
85
May, 2021
49
August, 2017
42
December, 2017
39
February, 2018
37
August, 2021
22
February, 2021
5
November, 2019
4
October, 2019
2
March, 2020
Available data
285
bam
254
bigWig
135
fastq
132
bed narrowPeak
131
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
285
Homo sapiens
Biosample type
1882
tissue
569
cell line
565
primary cell
285
in vitro differentiated cells
3
stem cell
Organ
54
connective tissue
27
embryo
24
epithelium
15
liver
3
pancreas
1
heart
Project
285
AMP
Genome assembly (visualization)
260
GRCh38
259
hg19
Lab
285
AMP-T2D consortium
Audit category:
101
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
17
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
285 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
3
59
adipocyte
48
4
1
neural progenitor cell
20
7
10
pancreatic endoderm
17
4
cardiac precursors (cardiac muscle cell)
19
1
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