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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
611
ChIP-seq
231
total RNA-seq
27
ATAC-seq
3
DNase-seq
1
WGBS
Assay category
611
DNA binding
231
Transcription
30
DNA accessibility
1
DNA methylation
Target of assay
386
transcription factor
114
histone
114
histone modification
106
control
89
recombinant protein
70
RNA binding protein
58
narrow histone mark
55
broad histone mark
33
chromatin remodeller
2
other context
2
other post-translational modification
Date released
314
November, 2017
117
February, 2021
90
May, 2021
61
November, 2018
54
August, 2017
45
August, 2021
43
December, 2017
39
February, 2018
33
October, 2019
27
December, 2018
23
January, 2019
20
November, 2019
7
March, 2020
Available data
873
bam
781
bigWig
568
fastq
536
bed narrowPeak
372
bigBed narrowPeak
250
tsv
60
bed broadPeak
60
bigBed broadPeak
60
tagAlign
28
bed bed3+
9
bedpe bed3+
7
bed bedgraph
6
bed bed3
6
hic
4
txt
3
tar
2
ibed
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
vcf
Organism
873
Homo sapiens
Biosample type
1907
tissue
609
primary cell
582
cell line
291
in vitro differentiated cells
3
stem cell
Organ
381
liver
75
epithelium
67
heart
66
artery
66
blood vessel
66
pancreas
66
vasculature
60
blood
60
bodily fluid
59
connective tissue
36
embryo
15
kidney
Project
869
AMP
4
T1D
Genome assembly (visualization)
773
hg19
728
GRCh38
Lab
873
AMP-T2D consortium
Audit category:
163
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
19
missing controlled_by
Audit category:
43
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
873 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
cell line
HepG2
359
5
1
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
EndoC_BH1
15
33
1
Panc1
13
1
+ See 7 more…
in vitro differentiated cells
cardiomyocytes
3
59
adipocyte
53
4
1
neural progenitor cell
20
7
10
pancreatic endoderm
18
4
cardiac precursors (cardiac muscle cell)
19
1
+ See 24 more…
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