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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
132
ChIP-seq
127
total RNA-seq
17
ATAC-seq
Assay category
132
DNA binding
127
Transcription
17
DNA accessibility
Target of assay
67
histone
67
histone modification
36
narrow histone mark
35
transcription factor
30
broad histone mark
30
control
4
RNA binding protein
2
chromatin remodeller
Date released
85
May, 2021
53
August, 2017
39
February, 2018
37
August, 2021
29
December, 2017
22
February, 2021
5
November, 2019
4
October, 2019
2
March, 2020
Available data
291
bam
259
bigWig
141
fastq
132
bed narrowPeak
131
tsv
40
tagAlign
25
bed bed3+
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
276
Homo sapiens
Biosample type
1345
tissue
320
primary cell
276
in vitro differentiated cells
223
cell line
3
stem cell
Organ
58
connective tissue
28
embryo
10
epithelium
3
pancreas
1
heart
1
liver
Project
276
AMP
Genome assembly (visualization)
250
GRCh38
249
hg19
Lab
276
AMP-T2D consortium
Audit category:
101
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
276 results
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ChIP-seq
total RNA-seq
ATAC-seq
in vitro differentiated cells
cardiomyocytes
3
59
adipocyte
53
4
neural progenitor cell
20
7
10
pancreatic endoderm
18
4
cardiac precursors (cardiac muscle cell)
19
1
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