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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
132
ChIP-seq
127
total RNA-seq
21
ATAC-seq
2
Capture-C
Assay category
132
DNA binding
127
Transcription
21
DNA accessibility
Target of assay
67
histone
67
histone modification
36
narrow histone mark
35
transcription factor
30
broad histone mark
30
control
4
RNA binding protein
2
chromatin remodeller
Date released
85
May, 2021
53
August, 2017
39
August, 2021
39
February, 2018
29
December, 2017
22
February, 2021
5
November, 2019
4
February, 2023
4
October, 2019
2
March, 2020
Available data
291
bam
259
bigWig
141
fastq
132
bed narrowPeak
131
tsv
40
tagAlign
25
bed bed3+
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
282
Homo sapiens
Biosample type
1348
tissue
506
primary cell
282
in vitro differentiated cells
229
cell line
3
stem cell
Organ
64
connective tissue
28
embryo
10
epithelium
3
pancreas
1
heart
1
liver
Project
282
AMP
Genome assembly (visualization)
255
hg19
250
GRCh38
Lab
280
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
103
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
282 results
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ChIP-seq
total RNA-seq
ATAC-seq
Capture-C
in vitro differentiated cells
cardiomyocytes
3
59
adipocyte
53
4
1
1
neural progenitor cell
20
7
10
pancreatic endoderm
18
4
cardiac precursors (cardiac muscle cell)
19
1
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