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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
124
ChIP-seq
121
total RNA-seq
17
ATAC-seq
1
DNase-seq
Assay category
124
DNA binding
121
Transcription
18
DNA accessibility
Target of assay
67
histone
67
histone modification
34
transcription factor
33
broad histone mark
33
narrow histone mark
23
control
6
RNA binding protein
3
chromatin remodeller
Date released
83
May, 2021
54
August, 2017
37
August, 2021
30
December, 2017
26
February, 2018
22
February, 2021
5
November, 2019
4
October, 2019
2
March, 2020
Available data
263
bam
238
bigWig
125
tsv
118
bed narrowPeak
114
fastq
40
tagAlign
22
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
263
Homo sapiens
Biosample type
1907
tissue
609
primary cell
574
cell line
263
in vitro differentiated cells
3
stem cell
Organ
59
connective tissue
embryo
24
epithelium
15
liver
3
pancreas
1
heart
Project
263
AMP
Genome assembly (visualization)
244
GRCh38
243
hg19
Lab
263
AMP-T2D consortium
Audit category:
95
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
14
inconsistent control read length
organ_slims!
embryo
BIOSAMPLE
ASSAY
263 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
3
59
adipocyte
53
4
1
neural progenitor cell
20
7
10
cardiac precursors (cardiac muscle cell)
19
1
hepatocyte
15
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