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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
ChIP-seq
127
total RNA-seq
17
ATAC-seq
1
DNase-seq
Assay category
131
DNA binding
127
Transcription
18
DNA accessibility
Target of assay
67
histone
67
histone modification
36
narrow histone mark
35
transcription factor
30
broad histone mark
29
control
4
RNA binding protein
2
chromatin remodeller
Date released
85
May, 2021
54
August, 2017
39
February, 2018
37
August, 2021
28
December, 2017
22
February, 2021
5
November, 2019
4
October, 2019
2
March, 2020
Available data
276
bam
245
bigWig
131
tsv
126
fastq
118
bed narrowPeak
40
tagAlign
25
bed bed3+
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
276
Homo sapiens
Biosample type
1619
tissue
597
primary cell
276
in vitro differentiated cells
216
cell line
3
stem cell
Organ
59
connective tissue
28
embryo
24
epithelium
liver
3
pancreas
1
heart
Project
276
AMP
Genome assembly (visualization)
251
GRCh38
250
hg19
Lab
276
AMP-T2D consortium
Audit category:
101
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
organ_slims!
liver
BIOSAMPLE
ASSAY
276 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
3
59
adipocyte
53
4
1
neural progenitor cell
20
7
10
pancreatic endoderm
18
4
cardiac precursors (cardiac muscle cell)
19
1
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