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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
177
DNase-seq
35
ChIP-seq
2
ATAC-seq
Assay category
179
DNA accessibility
35
DNA binding
Target of assay
35
histone
35
histone modification
20
broad histone mark
15
narrow histone mark
Date released
163
June, 2019
27
August, 2017
9
November, 2018
6
November, 2017
4
October, 2017
4
October, 2019
1
March, 2019
Available data
2198
bam
1991
bigWig
1207
tsv
1076
bed narrowPeak
578
bigBed narrowPeak
518
fastq
278
tagAlign
230
bed bed3+
214
bed broadPeak
177
bigBed broadPeak
160
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
17
bedpe bed3+
15
hic
10
bed bed3
7
bed bedgraph
6
csv
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
208
Homo sapiens
Biosample type
213
tissue
59
cell line
49
primary cell
1
in vitro differentiated cells
Organ
68
kidney
45
musculature of body
36
brain
36
limb
27
heart
20
pancreas
18
ureter
5
blood vessel
5
vasculature
4
artery
4
connective tissue
3
adipose tissue
3
eye
3
liver
2
nerve
1
spleen
Project
214
AMP
Genome assembly (visualization)
197
hg19
192
GRCh38
Lab
212
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
214 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 45 more…
in vitro differentiated cells
adipocyte
1
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