Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
391
ChIP-seq
178
DNase-seq
5
ATAC-seq
4
FAIRE-seq
Assay category
391
DNA binding
187
DNA accessibility
Target of assay
324
histone
324
histone modification
211
broad histone mark
113
narrow histone mark
67
transcription factor
22
RNA binding protein
3
chromatin remodeller
3
other context
3
other post-translational modification
Date released
163
June, 2019
93
May, 2019
64
April, 2019
57
November, 2017
50
December, 2017
49
October, 2019
45
October, 2018
23
August, 2017
17
November, 2018
6
January, 2019
6
October, 2017
3
December, 2018
2
July, 2019
Available data
2198
bam
1991
bigWig
1207
tsv
1076
bed narrowPeak
578
bigBed narrowPeak
518
fastq
278
tagAlign
230
bed bed3+
214
bed broadPeak
177
bigBed broadPeak
160
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
17
bedpe bed3+
15
hic
10
bed bed3
7
bed bedgraph
6
csv
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
572
Homo sapiens
Biosample type
561
tissue
355
cell line
109
primary cell
17
in vitro differentiated cells
Organ
116
brain
88
heart
87
kidney
84
limb
63
liver
62
blood vessel
62
pancreas
62
vasculature
38
musculature of body
26
nerve
25
artery
18
ureter
14
epithelium
13
connective tissue
13
spleen
10
adipose tissue
3
eye
Project
578
AMP
Genome assembly (visualization)
570
GRCh38
510
hg19
Lab
578
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
578 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
38
2
kidney
18
13
1
heart left ventricle
28
3
body of pancreas
26
4
tibial nerve
24
2
+ See 53 more…
in vitro differentiated cells
hepatocyte
14
adipocyte
1
2
See all biosamples
Download