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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
ChIP-seq
15
total RNA-seq
4
GRO-seq
1
DNase-seq
1
pCHi-C
Assay category
89
DNA binding
15
Transcription
1
DNA accessibility
Target of assay
65
histone
65
histone modification
33
narrow histone mark
33
transcription factor
broad histone mark
22
control
6
RNA binding protein
3
chromatin remodeller
Date released
42
August, 2017
32
December, 2017
31
February, 2018
4
January, 2018
1
August, 2018
Available data
254
bam
222
bigWig
131
tsv
110
fastq
95
bed narrowPeak
26
tagAlign
21
bed bed3+
10
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
110
Homo sapiens
Biosample type
419
cell line
376
primary cell
332
tissue
110
in vitro differentiated cells
3
stem cell
Organ
43
connective tissue
23
embryo
12
epithelium
8
liver
1
adipose tissue
Project
110
AMP
Genome assembly (visualization)
87
GRCh38
87
hg19
4
hg18
Lab
110
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
12
inconsistent control read length
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
110 results
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ChIP-seq
total RNA-seq
GRO-seq
DNase-seq
pCHi-C
in vitro differentiated cells
adipocyte
41
1
pancreatic endoderm
14
4
1
definitive endodermal cell
6
2
1
primitive gut cell
6
2
1
hepatocyte
8
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