Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
ChIP-seq
15
total RNA-seq
4
GRO-seq
1
DNase-seq
1
pCHi-C
Assay category
55
DNA binding
15
Transcription
1
DNA accessibility
Target of assay
65
histone
histone modification
33
narrow histone mark
33
transcription factor
31
broad histone mark
22
control
6
RNA binding protein
3
chromatin remodeller
Date released
29
August, 2017
23
February, 2018
19
December, 2017
4
January, 2018
1
August, 2018
Available data
212
bam
181
bigWig
131
tsv
76
fastq
54
bed narrowPeak
17
bed bed3+
14
tagAlign
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
5
bigBed narrowPeak
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
76
Homo sapiens
Biosample type
411
cell line
336
primary cell
303
tissue
76
in vitro differentiated cells
2
stem cell
Organ
30
connective tissue
15
embryo
5
epithelium
3
liver
1
adipose tissue
Project
76
AMP
Genome assembly (visualization)
54
GRCh38
54
hg19
4
hg18
Lab
76
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
10
inconsistent control read length
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
76 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
GRO-seq
DNase-seq
pCHi-C
in vitro differentiated cells
adipocyte
28
1
pancreatic endoderm
8
4
1
definitive endodermal cell
4
2
1
primitive gut cell
4
2
1
Posterior foregut
3
1
+ See 7 more…
See all biosamples
Download