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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
91
total RNA-seq
9
single cell RNA-seq
6
ATAC-seq
1
pCHi-C
Assay category
100
Transcription
6
DNA accessibility
Date released
65
May, 2021
18
February, 2021
6
February, 2023
6
July, 2018
4
May, 2020
3
March, 2020
2
December, 2019
2
October, 2019
1
June, 2018
Available data
146
bam
131
bigWig
107
tsv
38
bed narrowPeak
23
bigBed narrowPeak
11
fastq
6
bedpe bed3+
5
bed bed3+
4
hic
3
bed broadPeak
3
bigBed broadPeak
3
tagAlign
2
bed bedMethyl
2
bigBed bedMethyl
2
ibed
1
bed bedgraph
1
txt
Organism
107
Homo sapiens
Biosample type
90
in vitro differentiated cells
39
cell line
17
primary cell
3
tissue
1
stem cell
Organ
5
pancreas
2
embryo
2
epithelium
Project
103
AMP
4
T1D
Genome assembly (visualization)
98
GRCh38
98
hg19
Lab
103
AMP-T2D consortium
4
Kyle Gaulton, UCSD
Audit category:
107
inconsistent ontology term
2
audit script error
BIOSAMPLE
ASSAY
107 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
pCHi-C
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
cardiomyocytes (cardiac muscle cell)
3
2
1
intermediate cardiomyocytes
1
intermediate endothelial cell
1
+ See 4 more…
primary cell
gabaergic neuron
3
microglial cell/astrocyte
3
central memory CD8-positive, alpha-beta T cell
2
co-expressing pancreatic endocrine cell
2
naive B cel
2
+ See 3 more…
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