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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
240
total RNA-seq
7
pCHi-C
2
single cell RNA-seq
1
ATAC-seq
Assay category
242
Transcription
1
DNA accessibility
Date released
100
February, 2021
83
May, 2021
24
August, 2021
15
February, 2018
13
March, 2020
6
October, 2019
5
January, 2019
2
December, 2019
1
May, 2020
1
November, 2019
Available data
873
bam
781
bigWig
568
fastq
536
bed narrowPeak
372
bigBed narrowPeak
250
tsv
60
bed broadPeak
60
bigBed broadPeak
60
tagAlign
28
bed bed3+
9
bedpe bed3+
7
bed bedgraph
6
bed bed3
6
hic
4
txt
3
tar
2
ibed
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
vcf
Organism
250
Homo sapiens
Biosample type
1076
tissue
270
primary cell
131
in vitro differentiated cells
119
cell line
4
stem cell
Organ
53
heart
52
artery
52
blood vessel
52
vasculature
37
epithelium
34
pancreas
15
liver
14
embryo
6
kidney
5
connective tissue
1
mammary gland
Project
248
AMP
2
T1D
Genome assembly (visualization)
232
hg19
231
GRCh38
Lab
241
AMP-T2D consortium
9
Bing Ren, UCSD
Audit category:
129
inconsistent ontology term
2
audit script error
BIOSAMPLE
ASSAY
250 results
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total RNA-seq
pCHi-C
single cell RNA-seq
ATAC-seq
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
induced pluripotent stem cell
9
neural progenitor cell
7
cardiomyocytes (cardiac muscle cell)
3
1
2
+ See 19 more…
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
33
1
HepG2
14
1
H1-hESC
8
RCC 7860 vector
1
1
+ See 7 more…
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