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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
231
total RNA-seq
1
ATAC-seq
Assay category
231
Transcription
1
DNA accessibility
Date released
100
February, 2021
83
May, 2021
15
August, 2021
15
February, 2018
7
March, 2020
6
October, 2019
5
January, 2019
1
November, 2019
Available data
773
bam
771
bigWig
531
bed narrowPeak
485
fastq
368
bigBed narrowPeak
232
tsv
60
bed broadPeak
60
bigBed broadPeak
34
tagAlign
28
bed bed3+
8
bedpe bed3+
7
bed bedgraph
6
bed bed3
6
hic
3
tar
3
txt
2
ibed
1
hdf5
Organism
232
Homo sapiens
Biosample type
918
tissue
252
primary cell
127
in vitro differentiated cells
105
cell line
Organ
53
heart
52
artery
52
blood vessel
52
vasculature
37
epithelium
34
pancreas
14
embryo
5
connective tissue
5
liver
4
kidney
Project
230
AMP
2
T1D
Genome assembly (visualization)
232
hg19
231
GRCh38
Lab
232
AMP-T2D consortium
Audit category:
124
inconsistent ontology term
BIOSAMPLE
ASSAY
232 results
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total RNA-seq
ATAC-seq
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
induced pluripotent stem cell
9
neural progenitor cell
7
adipocyte
4
+ See 19 more…
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
33
1
H1-hESC
8
HepG2
5
early embryonic cell
2
+ See 4 more…
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