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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
19
ChIP-seq
4
ATAC-seq
2
Capture-C
2
pCHi-C
2
single cell RNA-seq
Assay category
129
Transcription
19
DNA binding
4
DNA accessibility
Target of assay
8
histone
8
histone modification
6
transcription factor
5
control
4
broad histone mark
4
narrow histone mark
Date released
79
May, 2021
22
February, 2021
15
February, 2018
12
December, 2017
9
August, 2021
7
August, 2017
4
February, 2023
4
March, 2020
2
December, 2019
2
October, 2019
Available data
291
bam
259
bigWig
141
fastq
132
bed narrowPeak
131
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
156
Homo sapiens
Biosample type
1281
tissue
307
primary cell
156
in vitro differentiated cells
122
cell line
7
stem cell
Organ
18
connective tissue
9
embryo
2
epithelium
1
heart
Project
156
AMP
Genome assembly (visualization)
152
hg19
146
GRCh38
Lab
154
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
92
inconsistent ontology term
2
audit script error
Audit category:
8
inconsistent control read length
BIOSAMPLE
ASSAY
156 results
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total RNA-seq
ChIP-seq
ATAC-seq
Capture-C
pCHi-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
adipocyte
4
7
1
1
induced pluripotent stem cell
9
neural progenitor cell
7
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