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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
139
ChIP-seq
129
total RNA-seq
37
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
139
DNA binding
131
Transcription
38
DNA accessibility
4
3D chromatin structure
Target of assay
77
histone
77
histone modification
39
broad histone mark
37
narrow histone mark
34
transcription factor
28
control
4
RNA binding protein
2
chromatin remodeller
Date released
80
May, 2021
68
August, 2017
42
August, 2021
39
February, 2018
26
February, 2021
24
December, 2017
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
267
bam
234
bigWig
129
tsv
122
fastq
114
bed narrowPeak
37
tagAlign
25
bed bed3+
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
323
Homo sapiens
Biosample type
2670
tissue
578
cell line
443
primary cell
323
in vitro differentiated cells
10
stem cell
Organ
97
connective tissue
29
embryo
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
323
AMP
Genome assembly (visualization)
272
hg19
245
GRCh38
4
hg18
Lab
316
AMP-T2D consortium
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
110
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
16
inconsistent control read length
lab.title!
Kyle Gaulton, UCSD
organ_slims!
epithelium
BIOSAMPLE
ASSAY
323 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
8
1
1
cardiomyocytes
3
59
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
cardiac precursors (cardiac muscle cell)
19
1
1
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