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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
ChIP-seq
total RNA-seq
37
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
198
DNA binding
38
DNA accessibility
4
3D chromatin structure
2
Transcription
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
68
August, 2017
48
May, 2021
43
December, 2017
31
August, 2021
24
February, 2018
9
February, 2023
6
March, 2020
6
October, 2019
5
November, 2019
4
February, 2021
4
January, 2018
2
December, 2019
1
August, 2018
Available data
164
bam
128
bed narrowPeak
127
bigWig
126
fastq
40
tagAlign
23
bed bed3+
17
bigBed narrowPeak
7
bedpe bed3+
5
bed bed3
4
bed bedgraph
4
hic
4
tsv
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
251
Homo sapiens
Biosample type
1700
tissue
841
primary cell
549
cell line
251
in vitro differentiated cells
10
stem cell
Organ
84
connective tissue
23
embryo
22
epithelium
15
liver
3
pancreas
1
adipose tissue
Project
251
AMP
Genome assembly (visualization)
163
hg19
138
GRCh38
4
hg18
Lab
209
AMP-T2D consortium
42
Kyle Gaulton, UCSD
Struan F.A. Grant, CHOP
Audit category:
25
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
lab.title!
Struan F.A. Grant, CHOP
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
251 results
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ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
7
1
embryonic stem cell
40
5
1
neural progenitor cell
21
10
pancreatic endoderm
18
1
hepatocyte
15
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