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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
4
ATAC-seq
Assay category
19
DNA binding
4
DNA accessibility
Target of assay
8
histone
8
histone modification
6
transcription factor
5
control
4
broad histone mark
4
narrow histone mark
Date released
12
December, 2017
7
August, 2017
4
February, 2023
Available data
291
bam
254
bigWig
141
fastq
131
tsv
128
bed narrowPeak
40
tagAlign
23
bed bed3+
17
bigBed narrowPeak
7
bedpe bed3+
5
bed bed3
4
bed bedgraph
4
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
23
Homo sapiens
Biosample type
205
tissue
37
primary cell
23
in vitro differentiated cells
3
cell line
3
stem cell
Organ
11
connective tissue
3
embryo
Project
23
AMP
Genome assembly (visualization)
23
hg19
19
GRCh38
Lab
23
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
0
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
Audit category:
8
inconsistent control read length
BIOSAMPLE
ASSAY
23 results
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ChIP-seq
ATAC-seq
in vitro differentiated cells
adipocyte
7
1
Posterior foregut
3
definitive endodermal cell
3
pancreatic endoderm
3
primitive gut cell
3
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