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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
177
ChIP-seq
30
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
1
DNase-seq
Assay category
177
DNA binding
Transcription
31
DNA accessibility
4
3D chromatin structure
Target of assay
98
histone
98
histone modification
49
broad histone mark
49
transcription factor
48
narrow histone mark
30
control
11
RNA binding protein
3
chromatin remodeller
Date released
68
August, 2017
48
May, 2021
43
December, 2017
August, 2021
24
February, 2018
12
February, 2023
6
March, 2020
6
October, 2019
5
November, 2019
4
February, 2021
4
January, 2018
1
August, 2018
Available data
134
bam
126
fastq
117
bigWig
107
bed narrowPeak
23
bed bed3+
20
tagAlign
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
2
tsv
1
bed broadPeak
1
bigBed broadPeak
Organism
221
Homo sapiens
Biosample type
1437
tissue
648
primary cell
520
cell line
221
in vitro differentiated cells
8
stem cell
Organ
84
connective tissue
23
embryo
22
epithelium
15
liver
3
pancreas
1
adipose tissue
Project
221
AMP
Genome assembly (visualization)
144
hg19
115
GRCh38
4
hg18
Lab
176
AMP-T2D consortium
42
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
24
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
month_released!
August, 2021
assay_slims!
Transcription
BIOSAMPLE
ASSAY
221 results
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ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
DNase-seq
in vitro differentiated cells
adipocyte
67
7
1
embryonic stem cell
40
6
1
pancreatic endoderm
18
1
hepatocyte
15
definitive endodermal cell
8
1
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